PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7592_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 419aa    MW: 46833.9 Da    PI: 4.5576
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7592_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012103119117
                                          EEETTTTEEESSHHHHH CS
                              zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                                          y Cp+Cgk+++  + L+
  cra_locus_7592_iso_3_len_1588_ver_3 103 YICPNCGKRYNALDALR 119
                                          89********9998885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005312.1E-281151IPR002853Transcription initiation factor IIE subunit alpha, N-terminal
Gene3DG3DSA:3.30.40.107.9E-1989148IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF577833.74E-890144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
XIVGFQLHLL LFDKNFVCSM LPYHSVICIL TDSERSKNIN AAVAATIDGQ QTGREGDEKV  60
KMHTHSYCCL DYAQIYDVVR YRLHRMRKKL KDELDNKNTV LEYICPNCGK RYNALDALRL  120
ISMDDEDFHC EICNGVLEVD SGKLASQEIG DGDDNAKRRH RDKLEDLLKK MEVQLKPLME  180
QLNRVKDLPV PEFGNLQAWE ARASAAARAA NGDLSNDPSK SSQGLGFGGT PMPFLGETKV  240
EVAFSGLEEK GNIKSEGASA PLKVLPPWMI KQGMNLTKEQ RGEVKEEGKM DGSRAPAGAS  300
DEKKSATEKH DEKNIQDEYV KAYYAALLQR QREQEVSVKK EEELPNSNPL SGDYGTSNER  360
QVGMKSKRED EDDGDDVEWE EEATAGNTSK PFKVNDLNVQ ADADDATGDD EDDDGIDWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fyw_W6e-126724086244TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT A
5fz5_W6e-126724086244TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100319.10.0PREDICTED: general transcription factor IIE subunit 1-like
TrEMBLA0A068TQ740.0A0A068TQ74_COFCA; Uncharacterized protein
STRINGVIT_11s0052g01850.t011e-180(Vitis vinifera)